paramagpy.protein.CustomStructureBuilder

class paramagpy.protein.CustomStructureBuilder(*arg, **kwargs)

This is an overload hack of BioPython’s CustomStructureBuilder

__init__(*arg, **kwargs)

Initialize the class.

Methods

get_structure()	Return the structure.
init_atom(name, coord, b_factor, occupancy, …)	Create a new Atom object.
init_chain(chain_id)	Create a new Chain object with given id.
init_model(model_id[, serial_num])	Create a new Model object with given id.
init_residue(resname, field, resseq, icode)	Create a new Residue object.
init_seg(segid)	Flag a change in segid.
init_structure(structure_id)	Initialize a new Structure object with given id.
set_anisou(anisou_array)	Set anisotropic B factor of current Atom.
set_header(header)	Set header.
set_line_counter(line_counter)	Tracks line in the PDB file that is being parsed.
set_sigatm(sigatm_array)	Set standard deviation of atom position of current Atom.
set_siguij(siguij_array)	Set standard deviation of anisotropic B factor of current Atom.
set_symmetry(spacegroup, cell)	Set symmetry.